PIMA Multiple Sequence Alignment Results

Maximal Linkage Clustering

pat-ML (((hpaip1b 2198.00 hpaip1c) 2079.68 hpaip1) 1619.00 mpaip1)

Page 1.1
		  1            15 16           30 31           45 46           60 61           75 76           90 
	1 pat-ML  --------------- --------------- --------------- --------------- --------------- ---------------	  0

	2 hpaip1b --------------- --------------E GPNGAGPAERA---- -RHQPPQPKAPGFLQ PPPLRQPRTTPPPGA QCEVPASPQRPSPPG	 56
	3 hpaip1c MSDGFDRAPGAGRGR SRGLGRGGGGPEGGG FPNGAGPAERA---- -RHQPPQPKAPGFLQ PPPLRQPRTTPPPGA QCEVPASPQRPSRPG	 85
	4 hpaip1  ----MSDGFESGPRC WSGPEPGPGRVEGAG LRAAVSRTERGLLSG HSHQPRNPKPRASCS HRRCGQPRTTPPPGA QCEVPASPQRPSRPG	 86
	5 mpaip1  --------------- --------------- --------------- --------------- --------------- ---------------	  0
Page 2.1
		  91          105 106         120 121         135 136         150 151         165 166         180 
	1 pat-ML  --------------- --------SESAMAK PQVVVXPVLXSKLSX NAPEFYPSGYSSrYT ESYEXGCEDYPTXSE YVQDFLNHLTEQPGS	 67

	2 hpaip1b ALPEQTRSLRAPPSS QDKIPQQNSESAMAK PQVVVAPVLRSKLSV NAPEFYPSGYSSSYT ESYEVGCEDYPTPSE YVQDFLNHLTEQPGS 	146 
	3 hpaip1c ALPEQTRPLRAPPSS QDKIPQQNSESAMAK PQVVVAPVLMSKLSV NAPEFYPSGYSSSYT ESYEDGCEDYPTLSE YVQDFLNHLTEQPGS 	175 
	4 hpaip1  ALPEQTRPLRAPPSS QDKIPQQNSESAMAK PQVVVAPVLMSKLSV NAPEFYPSGYSSSYT ESYEDGCEDYPTLSE YVQDFLNHLTEQPGS 	176 
	5 mpaip1  --------------- --------SESAMAK PQVVVVPVLMSKLSA NAPEFYPSGYSSNYT ESYEDGCEDYPTLSE YVQDFLNHLTEQPGS	 67
Page 3.1
		  181         195 196         210 211         225 226         240 241         255 256         270 
	1 pat-ML  FETEIEQFAETLNGf VTTDDALQELXELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EXKDQAAKGDEVTRK	157

	2 hpaip1b FETEIEQFAETLNGC VTTDDALQELAELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EVKDQAAKGDEVTRK	236
	3 hpaip1c FETEIEQFAETLNGC VTTDDALQELVELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EVKDQAAKGDEVTRK	265
	4 hpaip1  FETEIEQFAETLNGC VTTDDALQELVELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EVKDQAAKGDEVTRK	266
	5 mpaip1  FETEIEQFAETLNGW VTTDDALQELVELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EAKDQAAKGDEVTRK	157
Page 4.1
	 	  271         285 286         300 301         315 316         330 331         345 346         360 
	1 pat-ML  RFHAFVfFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDjWKEKGKX DMEEIIQRIENVVLD	247
	2 hpaip1b RFHAFVFFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDAWKEKGKM DMEEIIQRIENVVLD	326
	3 hpaip1c RFHAFVLFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDAWKEKGKM DMEEIIQRIENVVLD	355
	4 hpaip1  RFHAFVLFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDAWKEKGKM DMEEIIQRIENVVLD	356
	5 mpaip1  RFHAFVLFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDTWKEKGKT DMEEIIQRIENVVLD	247
Page 5.1
		  361         375 376         390 391         405 406         420 421         435 436         450 
	1 pat-ML  ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	337

	2 hpaip1b ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	416
	3 hpaip1c ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	445
	4 hpaip1  ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	446
	5 mpaip1  ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	337

Page 6.1
	  	  451         465 466         480 481         495 496         510 511         525 526         540        
	1 pat-ML  A-------------- --------------- ----    338

	2 hpaip1b AGDPYLDDIDDEMDP EIEEAYEKFCLESER KRKQ    450
	3 hpaip1c AGDPYLDDIDDEMDP EIEEAYEKFCLESER KRKQ    479 
	4 hpaip1  AGDPYLDDIDDEMDP EIEEAYEKFCLESER KRKQ    480 
	5 mpaip1  A-------------- --------------- ----    338

Sequential Branching Clustering

pat-SB (((hpaip1b 2198.00 hpaip1c) 2079.68 hpaip1) 1619.00 mpaip1)

Page 1.1
		  1            15 16           30 31           45 46           60 61           75 76           90 
	1 pat-SB  --------------- --------------- --------------- --------------- --------------- ---------------	  0

	2 hpaip1b --------------- --------------E GPNGAGPAERA---- -RHQPPQPKAPGFLQ PPPLRQPRTTPPPGA QCEVPASPQRPSPPG	 56
	3 hpaip1c MSDGFDRAPGAGRGR SRGLGRGGGGPEGGG FPNGAGPAERA---- -RHQPPQPKAPGFLQ PPPLRQPRTTPPPGA QCEVPASPQRPSRPG	 85
	4 hpaip1  ----MSDGFESGPRC WSGPEPGPGRVEGAG LRAAVSRTERGLLSG HSHQPRNPKPRASCS HRRCGQPRTTPPPGA QCEVPASPQRPSRPG	 86
	5 mpaip1  --------------- --------------- --------------- --------------- --------------- ---------------	  0
Page 2.1
		  91          105 106         120 121         135 136         150 151         165 166         180 
	1 pat-SB  --------------- --------SESAMAK PQVVVXPVLXSKLSX NAPEFYPSGYSSrYT ESYEXGCEDYPTXSE YVQDFLNHLTEQPGS        67

	2 hpaip1b ALPEQTRSLRAPPSS QDKIPQQNSESAMAK PQVVVAPVLRSKLSV NAPEFYPSGYSSSYT ESYEVGCEDYPTPSE YVQDFLNHLTEQPGS       146 
	3 hpaip1c ALPEQTRPLRAPPSS QDKIPQQNSESAMAK PQVVVAPVLMSKLSV NAPEFYPSGYSSSYT ESYEDGCEDYPTLSE YVQDFLNHLTEQPGS       175 
	4 hpaip1  ALPEQTRPLRAPPSS QDKIPQQNSESAMAK PQVVVAPVLMSKLSV NAPEFYPSGYSSSYT ESYEDGCEDYPTLSE YVQDFLNHLTEQPGS       176 
	5 mpaip1  --------------- --------SESAMAK PQVVVVPVLMSKLSA NAPEFYPSGYSSNYT ESYEDGCEDYPTLSE YVQDFLNHLTEQPGS        67
Page 3.1
		  181         195 196         210 211         225 226         240 241         255 256         270 
	1 pat-SB  FETEIEQFAETLNGf VTTDDALQELXELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EXKDQAAKGDEVTRK	157

	2 hpaip1b FETEIEQFAETLNGC VTTDDALQELAELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EVKDQAAKGDEVTRK	236
	3 hpaip1c FETEIEQFAETLNGC VTTDDALQELVELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EVKDQAAKGDEVTRK	265
	4 hpaip1  FETEIEQFAETLNGC VTTDDALQELVELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EVKDQAAKGDEVTRK	266
	5 mpaip1  FETEIEQFAETLNGW VTTDDALQELVELIY QQATSIPNFSYMGAR LCNYLSHHLTISPQS GNFRQLLLQRCRTEY EAKDQAAKGDEVTRK	157
Page 4.1
		  271         285 286         300 301         315 316         330 331         345 346         360 
	1 pat-SB  RFHAFVfFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDjWKEKGKX DMEEIIQRIENVVLD	247

	2 hpaip1b RFHAFVFFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDAWKEKGKM DMEEIIQRIENVVLD	326
	3 hpaip1c RFHAFVLFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDAWKEKGKM DMEEIIQRIENVVLD	355
	4 hpaip1  RFHAFVLFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDAWKEKGKM DMEEIIQRIENVVLD	356
	5 mpaip1  RFHAFVLFLGELYLN LEIKGTNGQVTRADI LQVGLRELLNALFSN PMDDNLICAVKLLKL TGSVLEDTWKEKGKT DMEEIIQRIENVVLD	247
Page 5.1
		  361         375 376         390 391         405 406         420 421         435 436         450 
	1 pat-SB  ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	337

	2 hpaip1b ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	416
	3 hpaip1c ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	445
	4 hpaip1  ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	446
	5 mpaip1  ANCSRDVKQMLLKLV ELRSSNWGRVHATST YREATPENDPNYFMN EPTFYTSDGVPFTAA DPDYQEKYQELLERE DFFPDYEENGTDLSG	337
Page 6.1
		  451         465 466         480 481	    495 496         510 511         525 526         540 
	1 pat-SB  A-------------- --------------- ----	338

	2 hpaip1b AGDPYLDDIDDEMDP EIEEAYEKFCLESER KRKQ	450
	3 hpaip1c AGDPYLDDIDDEMDP EIEEAYEKFCLESER KRKQ	479
	4 hpaip1  AGDPYLDDIDDEMDP EIEEAYEKFCLESER KRKQ	480
	5 mpaip1  A-------------- --------------- ----	338