PIMA Multiple Sequence Alignment Results

Maximal Linkage Clustering

pat-ML (((((hpaip2 633.00 hpaip2b) 629.00 hpaip2a) 609.00 (mpaip2 617.00 mpaip2b)) 397.00 hpaip2c) 208.36 dPaip2)



Page 1.1
              1            15 16           30 31           45 46           60 61           75 76           90 
    1 pat-ML  --------------- -------brXjrXXX TrXXaggXrkDXXcr XggXkrkXXFjEYMW MENEEkFlnrXXopL XEokfcrpCFoXMck     68

    2 hpaip2  --------------- -------MKDPSRSS TSPSI--INEDVIIN GHSHEDDNPFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    3 hpaip2b --------------- -------MKDPSRSS TSPSI--INEDVIIN GHSHEDDNPFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    4 hpaip2a --------------- -------MKDPSRSS TSPSI--INEDVIIN GHSHEDDNPFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    5 mpaip2  --------------- -------MKDPSRSS TSPSI--INDDVIIN GHSHEEDNPFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    6 mpaip2b --------------- -------MKDPSRSS TSPSI--INDDVIIN GHSHEEDNTFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    7 hpaip2c ALGGVAEYDLKEGLL VSPGSVIMNGSNMAN TSPSVK-SKEDQGLS GH-DEKENPFAEYMW MENEEDFNRQVEEEL QEQDFLDRCFQEMLD     88
    8 dPaip2  --------------- -----MLLKVPSVDW TDQIIYVVDDDESLS D--IDDEPDFSEYMW MENEEEFDKNELQRL EEEEIMQECFEAMIE     68



Page 2.1
              91          105 106         120 121         135 136         150 151         165 166         180 
    1 pat-ML  kEXogggggggprcX ogfXpXprrXrXXXc SXXXrXoXXcXKSXL NPXArEFaP------ ----    122

    2 hpaip2  EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SDGSSLEDLVVKSNL NPNAKEFVPGVKYGN I---    127
    3 hpaip2b EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SEGSSLEDLVVKSNL NPNAKEFVPGVKYGN I---    127
    4 hpaip2a EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SDGSSLEDLVVKSNL NPNATEFVPGVKYGN I---    127
    5 mpaip2  EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SDGSSLEDLVVKSNL NPNAKEFVPGVKY-- ----    124
    6 mpaip2b EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SDGSSLEDLVVKSNL NPNAKEFVPGVKY-- ----    124
    7 hpaip2c EEDQ-DWFIPSRDLP QAMGQLQQQLNGLSV SEGHDSEDILSKSNL NPDAKEFIPGEKY-- ----    145
    8 dPaip2  DELE-------EQIN E-WEKAKTDEQNTAL SALPKSQCDVEKSVL NPMADEFVPRCHVID FPAS    124

Sequential Branching Clustering

pat-SB ((((((hpaip2 633.00 hpaip2b) 631.00 hpaip2a) 616.00 mpaip2) 613.00 mpaip2b) 401.00 hpaip2c) 213.36 dPaip2)



Page 1.1
              1            15 16           30 31           45 46           60 61           75 76           90 
    1 pat-SB  --------------- -------brXjrXXX TrXXaggXrkDXXcr XggXkrkXXFjEYMW MENEEkFlnrXXopL XEokfcrpCFoXMck     68

    2 hpaip2  --------------- -------MKDPSRSS TSPSI--INEDVIIN GHSHEDDNPFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    3 hpaip2b --------------- -------MKDPSRSS TSPSI--INEDVIIN GHSHEDDNPFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    4 hpaip2a --------------- -------MKDPSRSS TSPSI--INEDVIIN GHSHEDDNPFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    5 mpaip2  --------------- -------MKDPSRSS TSPSI--INDDVIIN GHSHEEDNPFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    6 mpaip2b --------------- -------MKDPSRSS TSPSI--INDDVIIN GHSHEEDNTFAEYMW MENEEEFNRQIEEEL WEEEFIERCFQEMLE     66
    7 hpaip2c ALGGVAEYDLKEGLL VSPGSVIMNGSNMAN TSPSVK-SKEDQGLS GH-DEKENPFAEYMW MENEEDFNRQVEEEL QEQDFLDRCFQEMLD     88
    8 dPaip2  --------------- -----MLLKVPSVDW TDQIIYVVDDDESLS D--IDDEPDFSEYMW MENEEEFDKNELQRL EEEEIMQECFEAMIE     68



Page 2.1
              91          105 106         120 121         135 136         150 151         165 166         180 
    1 pat-SB  kEXogggggggprcX ogfXpXprrXrXXXc SXXXrXoXXcXKSXL NPXArEFaP------ ----    122

    2 hpaip2  EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SDGSSLEDLVVKSNL NPNAKEFVPGVKYGN I---    127
    3 hpaip2b EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SEGSSLEDLVVKSNL NPNAKEFVPGVKYGN I---    127
    4 hpaip2a EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SDGSSLEDLVVKSNL NPNATEFVPGVKYGN I---    127
    5 mpaip2  EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SDGSSLEDLVVKSNL NPNAKEFVPGVKY-- ----    124
    6 mpaip2b EEEEHEWFIPARDLP QTMDQIQDQFNDLVI SDGSSLEDLVVKSNL NPNAKEFVPGVKY-- ----    124
    7 hpaip2c EEDQ-DWFIPSRDLP QAMGQLQQQLNGLSV SEGHDSEDILSKSNL NPDAKEFIPGEKY-- ----    145
    8 dPaip2  DELE-------EQIN E-WEKAKTDEQNTAL SALPKSQCDVEKSVL NPMADEFVPRCHVID FPAS    124