PIMA Multiple Sequence Alignment Results

Maximal Linkage Clustering

pat ((((((hRF3 3123.00 hRF3b) 2694.00 mRF3) 2536.68 rRF3) 2313.44 xRF3) 1794.06 dRF3) 1523.50 cRF3)

Note: pichia pinus RF3 (pRF3) does not come through with PIMA.

Page 1.1
		1            15 16           30 31           45 46           60 61           75 76           90 
	1 pat   --------------- --------------- --------------- --------------- ------jgggXfNar AXXFVPrXrXXXfVg	24

	2 hRF3	--------------- -----MDSGSSSSDS APDCWDQVDMESPGL APSGDGVSSAVAEAQ REPLSSAFSRKLNVN AKPFVPNVHAAEFV-	69
	3 hRF3b --------------- -----MDSGSSSSDS APDCWDQVDMESPGS APSGDGVSSAVAEAQ REPLSSAFSRKLNVN AKPFVPNVHAAEFV-	69
	4 mRF3	--------------- --------------- --------------- ---MAAAEAAEAEAQ RKHLSLAFSSQLNIH AKPFVPSVSAAEFV-	41
	5 rRF3	--------------- --------------- --------------- -------LAAAAEAQ RDHLSAAFSRQLNVN AKPFVPNVHAAEFV-	37
	6 xRF3	ITGTTLFPPTWEVLP TLPTPCLTPSAPLIK QLVYPNPTHPEMDAS DSAPDSWEQADMEAT EAQLNNSMA-ALNVN AKPFVPNVNAVEFV-	88
	7 dRF3	--------------- --------------- --------------- --------MAAQENT EISTKF--S-TLNVN AVEFVPSFSYNSVVN	34
	8 cRF3	--------------- --------------- --------------- --------------- -----M--S-GWNVN ASSFVPNANARPFV-	21


Page 2.1
		91          105 106         120 121         135 136         150 151         165 166         180 
	1 pat   gggggjjXXXjjggg gggggjjXjgggggg grrgggggggggggg ggggggggoXXgggg ggggggggggggjXj XXjXXXjrXXXXXhX	114

	2 hRF3	-----PSFLRGPTQ- -PPTLPAGSG----S NDETC-TGAGYPQGK RMGRGAPVEPS---- --REEPLASLEGSNS AVTMELSEPVVENGE	141
	3 hRF3b -----PSFLRGPTQ- -PPTLPAGSG----S NDETC-TGAGYPQGK RMGRGAPVEPS---- --REEPLVSLEGSNS AVTMELSEPVVENGE	141
	4 mRF3	-----PSFLPGSPQ- -PPA-PTAS-----S CDETCIGGAGEPEGK RMEWGAPVEPS---- --KDGPLVSWEGSSS VVTMELSEPVVENGE	112
	5 rRF3	-----PSFLRGPAP- -PPA-PAGA-----A GNNH---GAGSVAG- --GPSAPVESSQ--- --EEQSL--CEGSIS AVSMELSEPVVENGE	101
	6 xRF3	-----PSFLVGSA-- -----PSDGQ----- -EE------------ --------EQQQ--- ----------QGSCT TVGMDVSEPVVENGE	127
	7 dRF3	VAEEAAAVVVAAAAA EETADPGPASGSATP ATTPDSVGSGGSTAG AAPPPPTAQGAGAAA PSAQPPTSSSNSASP APGSPATTPSAGAAA	124
	8 cRF3	-----PGQPYTP--- QPEQAAPEPT----- -EDW----------- --------EAQ---- ------------ADT SPAAVQPEVAEPVAV	 62


Page 3.1
		181         195 196         210 211         225 226         240 241         255 256         270 
	1 pat   XkXjXXXjfrgXrpX XrXggggggggkjXX XkkggggjXXpgggg gggggggggggggKX pXXXXXXXXjrnEHa NcVFaGHVDAGKSTI	204

	2 hRF3	VEMALEESWEHSKEV SEAEPGGGSSGDSGP PEE----SGQEMMEE KE--------EIRKS KSVIVPSGAPKKEHV NVVFIGHVDAGKSTI	219
	3 hRF3b VEMALEESWEHSKEV SEAEPGGGSSGDSGP PEE----SGQEMMEE KE--------EIRKS KSVIVPSGAPKKEHV NVVFIGHVDAGKSTI	219
	4 mRF3	VEMALEESWE-LKEV SEAKP-EASLGDAGP PEE----SVKEVMEE KE--------EVRKS KSVAIPSGAPKKEHV NVVFIGHVDAGKSTI	188
	5 rRF3	TEMSPEESWEHKEEI SEAEPGGGSLGDGRP PEE----GAQEMMEE EE--------EMPKP KSVAAPPGAPKKEHV NVVFIGHVDAGKSTI	179
	6 xRF3	TEMSPEESWDHKEEP IEAEPGGGSEGDGGT TEE----GTSEMMEE EE--------EIPKP KTIVVPPDAPKKEHV NVVFIGHVDAGKSTI	205
	7 dRF3	ADPTPIDGLNPSDKI ANNE---TDPADSWD VDDAVITPEDEEVED AEFTEGEATPKVSKK KVVKVEENRSKREHV NVVFIGHVDAGKSTI	211
	8 cRF3	QESAPVAPVS-ATEA PKK--------EPTP EED-LVAPLAK---- -------------KF QRTVYVDDGTHKEHI NMVFVGHVDAGKSTI	125


Page 4.1
		271         285 286         300 301         315 316         330 331         345 346         360 
	1 pat   GGQcMXLTGMVrnRT LEKYEREAnEKXREi WYLSWXbDTNrEERk KGKTVXVGRAdFETk nnHFTILDAPGHKjF VPNMIXGAXQADLAV	294

	2 hRF3	GGQIMFLTGMVDKRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE RKHFTILDAPGHKGF VPNMIGGASQADLAV	309
	3 hRF3b GGQIMFLTGMVDKRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE RKHFTILDAPGHKSF VPNMIGGASQADLAV	309
	4 mRF3	GGQIMFLTGMVDRRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE KKHFTILDAPGHKSF VPNMIGGASQADLAV	278
	5 rRF3	GGQIMYLTGMVDKRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE KKHFTILDAPGHKSF VPNMIGGASQADLAV	269
	6 xRF3	GGQIMYLTGMVEKRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE KKHFTILDAPGHKSF VPNMIGGASQADLAV	295
	7 dRF3	GGQIMSLTGMVHKRT LEKYEREAREKSRES WYLSWGLDTNQEERD KGKTVGVGRAFFETD RKHFTILDAPGHKSF VPNMIGGAAQADLAV	301
	8 cRF3	GGQLMFLTGMVDKRT LEKYEREAKEKGRES WYLSWCMDTNDEERE KGKTVEVGRAYFETE KRHFTILDAPGHKSF VPNMIVGANQADLAV	215


Page 5.1
		361         375 376         390 391         405 406         420 421         435 436         450 
	1 pat   LVISARnGEFETGFk nGGQTREHjMLXKTA GVKeLaaLaNKMDDP TVrWrXrRdrEfpXK cXPdLnKcGFrPXrD cXdcPCSGLiGjXcK	384

	2 hRF3	LVISARKGEFETGFE KGGQTREHAMLAKTA GVKHLIVLINKMDDP TVNWSIERYEECKEK LVPFLKKVGFSPKKD IHFMPCSGLTGANIK	399
	3 hRF3b LVISARKGEFETGFE KGGQTREHAMLAKTA GVKHLIVLINKMDDP TVNWSIERYEECKEK LVPFLKKVGFSPKKD IHFMPCSGLTGANIK	399
	4 mRF3	LVISARKGEFETGFE KGGQTREHAMLAKTA GVKYLIVLINKMDDP TVDWSSERYEECKEK LVPFLKKVGFSPKKD IHFMPCSGLTGANIK	368
	5 rRF3	LVISARKGEFETGFE KGGQTREHAMLAKTA GVKHLIVLINKMDDP TVNWSNERYEECKEK LVPFLKKVGFNPKKD IHFMPCSGLTGANLK	359
	6 xRF3	LVISARKGEFETGFE KGGQTREHAMLAKTA GVKHLIVLINKMDDP TVNWSNDRYEECKEK LVPFLKKVGFNPKKD IYFMPCSGLTGANLK	385
	7 dRF3	LVISARKGEFETGFD RGGQTREHAMLAKTA GVKHLVVLVNKMDDP TVNWDQTRYNECKDK ILPYLKKLGFNPAKD LTFMPCSGLSGTGLK	391
	8 cRF3	LVISARRGEFETGFD RGGQTREHSMLVKTA GVKHLVILVNKMDDP TVKWEEERFKEIEGK LTPFLRKLGFNPKTD ITYVPCSGLTGAFIK	305


Page 6.1
		451         465 466         480 481         495 496         510 511         525 526         540 
	1 pat   kggXXrXXXWYXGXX FIXdcDgXLPrfrRr XlGPfXfjaXkKYrk MGTVacGKcESGXXX KGrrLXcMPNnrXVX VXXcfjDkXEXrXVX	474

	2 hRF3	E--QSDFCPWYTGLP FIPYLD-NLPNFNRS IDGPIRLPIVDKYKD MGTVVLGKLESGSIF KGQQLVMMPNKHNVE VLGILSDDTETDFVA	486
	3 hRF3b E--QSDFCPWYTGLP FIPYLD-NLPNFNRS IDGPIRLPIVDKYKD MGTVVLGKLESGSIF KGQQLVMMPNKHNVE VLGILSDDTETDFVA	486
	4 mRF3	E--QSDFCPWYTGLP FIPYLD-SLPNFNRS IDGPIRLPIVDKYKD MGTVVLGKLESGSIF KGQQLVMMPNKHSVE VLGIVSDDAETDFVA	455
	5 rRF3	E--QSDFCPWYIGLP FIPYLD-NLPNFNRS VDGPIRLPIVDKYKD MGTVVLGKLESGSIC KGQQLVMMPNKHNVE VLGILSDDVETDSVA	446
	6 xRF3	E--PVETCPWYIGLA FISYLD-SLPNFNRS LDGPVRLPIVDKYKD MGTVILGKLESGSIC KGQQLAMMPNKHIVE VLSLLSDEVETELVA	472
	7 dRF3	DQIPETLCPWYRGPA FIPFID-ELPSLNRK SDGPFIMPIVDKYKD MGTVVMGKVESGTAR KGQNLLVMPNRTQVA VDQLFSDDFEVTSVG	480
	8 cRF3	DRPTGSEGNWYSGPC FIEFIDVLLPSYKRD FNGPVRCTVAEKYSE MGTVIIGKMESGCVQ KGDTLVVMPNKQPVQ VLQIWADDVETERVV	395


Page 7.1
		541         555 556         570 571         585 586         600 601         615 616         630 
	1 pat   jGkNcKfnLKGIEEm kcXjGFacCrXXrXX riGnXFDXoacacEH nSIIXjGYrXVbHIr XXXEEVraggggggg ggggggggggggggg	564

	2 hRF3	PGENLKIRLKGIEEE EILPGFILCDPSNLC HSGRTFDVQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	554
	3 hRF3b PGENLKIRLKGIEEE EILPGFILCDPSNLC HSGRTFDVQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	554
	4 mRF3	PGENLKIRLKGIEEE EILPGFILCEPSNLC HSGRTFDVQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	523
	5 rRF3	PGENLKIRLKGIEEE EILPGFILCDLNNLC HSGRTFDAQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	514
	6 xRF3	PGENLKLRLKGIEEE EILPGFILCDPNNLC HSGRTFDAQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	540
	7 dRF3	PGENVKIKLKGIEEE DVSPGFVLCDAANPI KTGKIFDAQVVILEH KSIICAGYSAVMHIH CAAEEVTV------- ---------------	548
	8 cRF3	AGDNIKFKLKGIEEN ELQGGFIICSPDSLA KTGRVFDAEVLVLEH RSIIASGYSCVLHIQ SAVEEVTVKVCLLRP EELGGCPIGGITNSG	485


Page 8.1
		631         645 646         660 661         675 676         690 691         705 706         720 
	1 pat   ggggggggggggggg ggggrhcIXXaDKKi GkggKrRjnFVKQDo XXIXRcpXjXXffLE XFKXdPXbGRFTLRD EXKTIAIGKVLKcV-	653

	2 hRF3	--------------- ----TALISLVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	625
	3 hRF3b --------------- ----TALISLVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	625
	4 mRF3	--------------- ----TALISLVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	594
	5 rRF3	--------------- ----TALICLVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	585
	6 xRF3	--------------- ----TALICMVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	611
	7 dRF3	--------------- ----KALICLVDKKS GDKSKTRPRFVKQDQ VAIMRIECSGMICLE QFKLFPQMGRFTLRD ENKTIAIGKVLKVVE	619
	8 cRF3	DWPRPQNRGLQYAHF CNCRTGVIATIDKKT GE--KKRAKFVKQDE KCIMRLESPEPFVLE PFKEYPYLGRFTLRD EGKTIAIGKVLKVVE	573


Page 9.1
		721	     735 736         750 751         765 766         780 781         795 796         810 
	1 pat   ---	653

	2 hRF3	EKD	628
	3 hRF3b EKD	628
	4 mRF3	EKD	597
	5 rRF3	EKD	588
	6 xRF3	EKD	614
	7 dRF3	---	619
	8 cRF3	---	573

Sequential Branching Clustering

pat-SB ((((((hRF3 3123.00 hRF3b) 2694.00 mRF3) 2624.68 rRF3) 2397.15 xRF3) 1831.42 dRF3) 1582.60 cRF3)

Page 1.1
		1	      15 16           30 31           45 46           60 61           75 76           90 
	1 pat   --------------- --------------- --------------- --------------- ------jgggXfNar AXXFVPrXrXXXfVg	24

	2 hRF3	--------------- -----MDSGSSSSDS APDCWDQVDMESPGL APSGDGVSSAVAEAQ REPLSSAFSRKLNVN AKPFVPNVHAAEFV-	69
	3 hRF3b --------------- -----MDSGSSSSDS APDCWDQVDMESPGS APSGDGVSSAVAEAQ REPLSSAFSRKLNVN AKPFVPNVHAAEFV-	69
	4 mRF3	--------------- --------------- --------------- ---MAAAEAAEAEAQ RKHLSLAFSSQLNIH AKPFVPSVSAAEFV-	41
	5 rRF3	--------------- --------------- --------------- -------LAAAAEAQ RDHLSAAFSRQLNVN AKPFVPNVHAAEFV-	37
	6 xRF3	ITGTTLFPPTWEVLP TLPTPCLTPSAPLIK QLVYPNPTHPEMDAS DSAPDSWEQADMEAT EAQLNNSMA-ALNVN AKPFVPNVNAVEFV-	88
	7 dRF3	--------------- --------------- --------------- --------MAAQENT EISTKF--S-TLNVN AVEFVPSFSYNSVVN	34
	8 cRF3	--------------- --------------- --------------- --------------- -----M--S-GWNVN ASSFVPNANARPFV-	21


Page 2.1
		91          105 106         120 121         135 136         150 151         165 166         180 
	1 pat-SB gggggjjXXXjjggg gggggjjXjgggggg grrgggggggggggg ggggggggoXXgggg ggggggggggggjXj XXjXXXjrXXXXXhX	114

	2 hRF3	-----PSFLRGPTQ- -PPTLPAGSG----S NDETC-TGAGYPQGK RMGRGAPVEPS---- --REEPLASLEGSNS AVTMELSEPVVENGE	141
	3 hRF3b -----PSFLRGPTQ- -PPTLPAGSG----S NDETC-TGAGYPQGK RMGRGAPVEPS---- --REEPLVSLEGSNS AVTMELSEPVVENGE	141
	4 mRF3	-----PSFLPGSPQ- -PPA-PTAS-----S CDETCIGGAGEPEGK RMEWGAPVEPS---- --KDGPLVSWEGSSS VVTMELSEPVVENGE	112
	5 rRF3	-----PSFLRGPAP- -PPA-PAGA-----A GNNH---GAGSVAG- --GPSAPVESSQ--- --EEQSL--CEGSIS AVSMELSEPVVENGE	101
	6 xRF3	-----PSFLVGSA-- -----PSDGQ----- -EE------------ --------EQQQ--- ----------QGSCT TVGMDVSEPVVENGE	127
	7 dRF3	VAEEAAAVVVAAAAA EETADPGPASGSATP ATTPDSVGSGGSTAG AAPPPPTAQGAGAAA PSAQPPTSSSNSASP APGSPATTPSAGAAA	124
	8 cRF3	-----PGQPYTP--- QPEQAAPEPT----- -EDW----------- --------EAQ---- ------------ADT SPAAVQPEVAEPVAV	 62


Page 3.1
		181         195 196         210 211         225 226         240 241         255 256         270 
	1 pat-SB XkXjXXXjfrgXrpX XrXggggggggkjXX XkkggggjXXpgggg gggggggggggggKX pXXXXXXXXjrnEHa NcVFaGHVDAGKSTI	204

	2 hRF3	VEMALEESWEHSKEV SEAEPGGGSSGDSGP PEE----SGQEMMEE KE--------EIRKS KSVIVPSGAPKKEHV NVVFIGHVDAGKSTI	219
	3 hRF3b VEMALEESWEHSKEV SEAEPGGGSSGDSGP PEE----SGQEMMEE KE--------EIRKS KSVIVPSGAPKKEHV NVVFIGHVDAGKSTI	219
	4 mRF3	VEMALEESWE-LKEV SEAKP-EASLGDAGP PEE----SVKEVMEE KE--------EVRKS KSVAIPSGAPKKEHV NVVFIGHVDAGKSTI	188
	5 rRF3	TEMSPEESWEHKEEI SEAEPGGGSLGDGRP PEE----GAQEMMEE EE--------EMPKP KSVAAPPGAPKKEHV NVVFIGHVDAGKSTI	179
	6 xRF3	TEMSPEESWDHKEEP IEAEPGGGSEGDGGT TEE----GTSEMMEE EE--------EIPKP KTIVVPPDAPKKEHV NVVFIGHVDAGKSTI	205
	7 dRF3	ADPTPIDGLNPSDKI ANNE---TDPADSWD VDDAVITPEDEEVED AEFTEGEATPKVSKK KVVKVEENRSKREHV NVVFIGHVDAGKSTI	211
	8 cRF3	QESAPVAPVS-ATEA PKK--------EPTP EED-LVAPLAK---- -------------KF QRTVYVDDGTHKEHI NMVFVGHVDAGKSTI	125


Page 4.1
		271         285 286         300 301         315 316         330 331         345 346         360 
	1 pat-SB GGQcMXLTGMVrnRT LEKYEREAnEKXREi WYLSWXbDTNrEERk KGKTVXVGRAdFETk nnHFTILDAPGHKjF VPNMIXGAXQADLAV	294

	2 hRF3	GGQIMFLTGMVDKRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE RKHFTILDAPGHKGF VPNMIGGASQADLAV	309
	3 hRF3b GGQIMFLTGMVDKRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE RKHFTILDAPGHKSF VPNMIGGASQADLAV	309
	4 mRF3	GGQIMFLTGMVDRRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE KKHFTILDAPGHKSF VPNMIGGASQADLAV	278
	5 rRF3	GGQIMYLTGMVDKRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE KKHFTILDAPGHKSF VPNMIGGASQADLAV	269
	6 xRF3	GGQIMYLTGMVEKRT LEKYEREAKEKNRET WYLSWALDTNQEERD KGKTVEVGRAYFETE KKHFTILDAPGHKSF VPNMIGGASQADLAV	295
	7 dRF3	GGQIMSLTGMVHKRT LEKYEREAREKSRES WYLSWGLDTNQEERD KGKTVGVGRAFFETD RKHFTILDAPGHKSF VPNMIGGAAQADLAV	301
	8 cRF3	GGQLMFLTGMVDKRT LEKYEREAKEKGRES WYLSWCMDTNDEERE KGKTVEVGRAYFETE KRHFTILDAPGHKSF VPNMIVGANQADLAV	215


Page 5.1
		361         375 376         390 391         405 406         420 421         435 436         450 
	1 pat-SB LVISARnGEFETGFk nGGQTREHjMLXKTA GVKeLaaLaNKMDDP TVrWrXrRdrEfpXK cXPdLnKcGFrPXrD cXdcPCSGLiGjXcK	384

	2 hRF3	LVISARKGEFETGFE KGGQTREHAMLAKTA GVKHLIVLINKMDDP TVNWSIERYEECKEK LVPFLKKVGFSPKKD IHFMPCSGLTGANIK	399
	3 hRF3b LVISARKGEFETGFE KGGQTREHAMLAKTA GVKHLIVLINKMDDP TVNWSIERYEECKEK LVPFLKKVGFSPKKD IHFMPCSGLTGANIK	399
	4 mRF3	LVISARKGEFETGFE KGGQTREHAMLAKTA GVKYLIVLINKMDDP TVDWSSERYEECKEK LVPFLKKVGFSPKKD IHFMPCSGLTGANIK	368
	5 rRF3	LVISARKGEFETGFE KGGQTREHAMLAKTA GVKHLIVLINKMDDP TVNWSNERYEECKEK LVPFLKKVGFNPKKD IHFMPCSGLTGANLK	359
	6 xRF3	LVISARKGEFETGFE KGGQTREHAMLAKTA GVKHLIVLINKMDDP TVNWSNDRYEECKEK LVPFLKKVGFNPKKD IYFMPCSGLTGANLK	385
	7 dRF3	LVISARKGEFETGFD RGGQTREHAMLAKTA GVKHLVVLVNKMDDP TVNWDQTRYNECKDK ILPYLKKLGFNPAKD LTFMPCSGLSGTGLK	391
	8 cRF3	LVISARRGEFETGFD RGGQTREHSMLVKTA GVKHLVILVNKMDDP TVKWEEERFKEIEGK LTPFLRKLGFNPKTD ITYVPCSGLTGAFIK	305


Page 6.1
		451         465 466         480 481         495 496         510 511         525 526         540 
	1 pat-SB kggXXrXXXWYXGXX FIXdcDgXLPrfrRr XlGPfXfjaXkKYrk MGTVacGKcESGXXX KGrrLXcMPNnrXVX VXXcfjDkXEXrXVX	474

	2 hRF3	E--QSDFCPWYTGLP FIPYLD-NLPNFNRS IDGPIRLPIVDKYKD MGTVVLGKLESGSIF KGQQLVMMPNKHNVE VLGILSDDTETDFVA	486
	3 hRF3b E--QSDFCPWYTGLP FIPYLD-NLPNFNRS IDGPIRLPIVDKYKD MGTVVLGKLESGSIF KGQQLVMMPNKHNVE VLGILSDDTETDFVA	486
	4 mRF3	E--QSDFCPWYTGLP FIPYLD-SLPNFNRS IDGPIRLPIVDKYKD MGTVVLGKLESGSIF KGQQLVMMPNKHSVE VLGIVSDDAETDFVA	455
	5 rRF3	E--QSDFCPWYIGLP FIPYLD-NLPNFNRS VDGPIRLPIVDKYKD MGTVVLGKLESGSIC KGQQLVMMPNKHNVE VLGILSDDVETDSVA	446
	6 xRF3	E--PVETCPWYIGLA FISYLD-SLPNFNRS LDGPVRLPIVDKYKD MGTVILGKLESGSIC KGQQLAMMPNKHIVE VLSLLSDEVETELVA	472
	7 dRF3	DQIPETLCPWYRGPA FIPFID-ELPSLNRK SDGPFIMPIVDKYKD MGTVVMGKVESGTAR KGQNLLVMPNRTQVA VDQLFSDDFEVTSVG	480
	8 cRF3	DRPTGSEGNWYSGPC FIEFIDVLLPSYKRD FNGPVRCTVAEKYSE MGTVIIGKMESGCVQ KGDTLVVMPNKQPVQ VLQIWADDVETERVV	395


Page 7.1
		541         555 556         570 571         585 586         600 601         615 616         630 
	1 pat-SB jGkNcKfnLKGIEEm kcXjGFacCrXXrXX riGnXFDXoacacEH nSIIXjGYrXVbHIr XXXEEVraggggggg ggggggggggggggg	564

	2 hRF3	PGENLKIRLKGIEEE EILPGFILCDPSNLC HSGRTFDVQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	554
	3 hRF3b PGENLKIRLKGIEEE EILPGFILCDPSNLC HSGRTFDVQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	554
	4 mRF3	PGENLKIRLKGIEEE EILPGFILCEPSNLC HSGRTFDVQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	523
	5 rRF3	PGENLKIRLKGIEEE EILPGFILCDLNNLC HSGRTFDAQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	514
	6 xRF3	PGENLKLRLKGIEEE EILPGFILCDPNNLC HSGRTFDAQIVIIEH KSIICPGYNAVLHIH TCIEEVEI------- ---------------	540
	7 dRF3	PGENVKIKLKGIEEE DVSPGFVLCDAANPI KTGKIFDAQVVILEH KSIICAGYSAVMHIH CAAEEVTV------- ---------------	548
	8 cRF3	AGDNIKFKLKGIEEN ELQGGFIICSPDSLA KTGRVFDAEVLVLEH RSIIASGYSCVLHIQ SAVEEVTVKVCLLRP EELGGCPIGGITNSG	485


Page 8.1
		631         645 646         660 661         675 676         690 691         705 706         720 
	1 pat-SB ggggggggggggggg ggggrhcIXXaDKKi GkggKrRjnFVKQDo XXIXRcpXjXXffLE XFKXdPXbGRFTLRD EXKTIAIGKVLKcV-	653

	2 hRF3	--------------- ----TALISLVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	625
	3 hRF3b --------------- ----TALISLVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	625
	4 mRF3	--------------- ----TALISLVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	594
	5 rRF3	--------------- ----TALICLVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	585
	6 xRF3	--------------- ----TALICMVDKKS GEKSKTRPRFVKQDQ VCIARLRTAGTICLE TFKDFPQMGRFTLRD EGKTIAIGKVLKLVP	611
	7 dRF3	--------------- ----KALICLVDKKS GDKSKTRPRFVKQDQ VAIMRIECSGMICLE QFKLFPQMGRFTLRD ENKTIAIGKVLKVVE	619
	8 cRF3	DWPRPQNRGLQYAHF CNCRTGVIATIDKKT GE--KKRAKFVKQDE KCIMRLESPEPFVLE PFKEYPYLGRFTLRD EGKTIAIGKVLKVVE	573


Page 9.1
		721	     735 736         750 751         765 766         780 781         795 796         810 
	1 pat-SB ---	653

	2 hRF3	EKD	628
	3 hRF3b EKD	628
	4 mRF3	EKD	597
	5 rRF3	EKD	588
	6 xRF3	EKD	614
	7 dRF3	---	619
	8 cRF3	---	573