PIMA Multiple Sequence Alignment Results

Maximal Linkage Clustering

pat-ML (((((RNA-BP2 1328.06 RNA-BP4) 1020.02 RNA-BP3) 872.03 RNA-BP1) 711.01 ((RNA-BP6 1202.00 RNA-BP7) 962.70 RNA-BP8)) 579.70 RNA-BP5)



Page 1.1
              1            15 16           30 31           45 46           60 61           75 76           90 
    1 pat-ML  --------------- --------------- --------------- --------------- --------------- ---------------      0

    2 RNA-BP2 --------------- -MAVIESVGANTTVE AGGLI-------SPS PPSSVTSQESGASSN --NDHG--------G NGIHDEIGVHVARS-     56
    3 RNA-BP4 --------------- -MAVVETGAAATAAD AGGVVI---QPPPSS PPSSMTSQDSGVSSD DQNHHSRIDQVLRHD QGLYSKIGSHVARSD     71
    4 RNA-BP3 MAVAENAGVKVDSSG QNLDNNNTAASATET TKPPCPDDDQSPKSD SSTPLTIDSTPETDD RINETA--------- ----QKVQTLNGFS-     76
    5 RNA-BP1 --------------- --------------- ------------MAV AENVGVKVDSSNNQN IDNNTT----SLVET KPSCSDDQTPKSKSS     44
    6 RNA-BP6 --------------- --------------- --------------- --------------- --------------- ---------------      0
    7 RNA-BP7 --------------- --------------- --------------- --------MAAITEM ATDSNDVINDGGTGD GIEKSTDSKPEIESD     37
    8 RNA-BP8 --------------- --------------- --------------- --------MATVTEM PTDVVVVDDVKEVST KSEKIIDEGIEKSSI     37
    9 RNA-BP5 --------------- --------------- --------------- --------------- -----------MAAV AGGSRAAPPADSAAV     19



Page 2.1
              91          105 106         120 121         135 136         150 151         165 166         180 
    1 pat-ML  --------------- ----frrLNPXApEF fPjXgggrXXggggg gjgggggggggXrgg gglXfXXXXXXXXgg gggggrXXgggrXnr     71

    2 RNA-BP2 ---DGGESFKRDMRE LHELLSKLNPMAKEF IPPS-LTKPVVNGFN GGFFA------VN-- --NGFVAAGNFPV-- ---NEDGSF--RRKK    125
    3 RNA-BP4 -GVDGGESFKRDMRE LQELFSKLNPMAEEF VPPS-LNKQGGNGVN GGFFTSAGSFFRN-- --NGFAGTGNGGYG- ---NENGGF--RRKK    149
    4 RNA-BP3 --GNGERDNNGEIKD LADAFSKLNPMAQEF VPPS-LARSQSGVLR NGL-------GFT-- --NNFAAPPKLADG- ---NDHFP---RRRR    145
    5 RNA-BP1 VLTNELIQRTSEV-N LKSEISHLNPMAKEF VPSF-LAQTHHSEF- WG-----NRFWFT-- --NHFPKQTIFLIG- -----QFA---TMRR    113
    6 RNA-BP6 --------------- ---MFKKLNPEAKEF FPSY---KRN----- -T---------NQ-- -SDDFVIAIKPSGED ---NKKVAINRRRRN     48
    7 RNA-BP7 DLKPKSKPEYDQMKK LVAMFKKLNPEAKEF FPSY---KRN----- -T---------NQ-- -SDDFVIAIKPSGED ---NKKVAINRRRRN    103
    8 RNA-BP8 TDSKTETESRLDMHK LVAMFKKLNPLAKEF FPSYYDPKKNNQVA- KA---------NQFL PADDFETTKKQSGEE FDLDAKKDDNTRKRR    117
    9 RNA-BP5 AAVAKEAEYQKGVQK LVDLLSKLNPAAKEF VPSSAAVSSP---SR KAL--SADAPVFDY- --NSIGGWNGGGK-- -ESGADAYQQRRRRN     98



Page 3.1
              181         195 196         210 211         225 226         240 241         255 256         270 
    1 pat-ML  XdXgpGnXgXcXXnX rXXrrkkXInRTVYV SDcDrrVTEEXLAXc FXXfGQVVDCRcCGD XrSaLRFAFaEFjlX XGAXXALrXjGTcfG    161

    2 RNA-BP2 SFGQQGKR-RMNPRT SLAQREEIIRRTVYV SDIDQQVTEEQLAGL FIGFGQVVDCRICGD PNSVLRFAFIEFTDE VGARTALNLSGTMLG    214
    3 RNA-BP4 SFG-QGKR-RMNART SMAQREDVIRRTVYV SDLDQQVTEEQLAGL FVSCGQVVDCRICGD PNSVLRFAFIEFTDE EGAMTALNLSGTMLG    237
    4 RNA-BP3 SFG-QGKR-RMNKRT SLAQKDDVIRRTVYV SDIDQQVTEENLAGV FINCGQVVDCRVCGD PNSVLRFAFIEFTNE EGARAALSMSGTVLG    233
    5 RNA-BP1 NFG-KGRP-WITKKT NLVQNEDMIKRTVYV SDIDNQVTEEQLASL FLSCGQVVDCRMCGD YKSILRFAFIEFTDA EGARSALRKSGTMFG    201
    6 RNA-BP6 NYN-QGRRVRLPGRA SKAQREDSIRRTVYV SDIDQSVTEEGLAGL FSSCGQVVDCRICGD PNSVLRFAFVEFSDD QGARSALSLGGTMIG    137
    7 RNA-BP7 NYN-QGRRVRLPGRA SKAQREDSIRRTVYV SDIDQSVTEEGLAGL FSSCGQVVDCRICGD PNSVLRFAFVEFSDD QGARSALSLGGTMIG    192
    8 RNA-BP8 NYS-QGRR-RLTGRI SKAQREDSIRRTVYV SDIDQSVTEEGLAGL FSNCGQVVDCRICGD PHSVLRFAFVEFADD QGAHEALSLGGTMLG    205
    9 RNA-BP5 GYLSQGRR-RMNERA RHADREDSIRRTVYV SDIDHTVTEERLADI FANCGQVVDCRICGD PHSVLRFAFIEFADE EGARTALNLGGTMLG    187



Page 4.1
              271         285 286         300 301         315 316         330 331         345 346         360 
    1 pat-ML  XePcnVfXSKTAIXP VNPrFLPpipDEXEX fXnTaYCTNaDKrXi pXkcrXFFpXXCGEX XrcXgXhXXXXXXXc XdcXfXXArXAcXhX    251

    2 RNA-BP2 FYPVKVMPSKTAIAP VNPTFLPRTEDEREM CARTIYCTNIDKKLT QTDIKLFFESVCGEV YRLRLLGDYHHPTRI GFVEFVMAESAIAAL    304
    3 RNA-BP4 FYPVKVLPSKTAIAP VNPTFLPRTEDEREM CARTIYCTNIDKKVT QSDVKIFFESFCGEV YRLRLLGDYQHSTRI AFVEFVMAESAIAAL    327
    4 RNA-BP3 FYPLKVLPSKTAIAP VNPTFLPRSEDEREM CVRTVYCTNIDKRIT QIDLKGFFEMLCGEV HRLR-LGDYHHQTRI AFVEFAMAESAIAAL    322
    5 RNA-BP1 SHPIRVFMSKTAIAP VNPSFLPQSKDELEK CGKTVYCTNIDKEVT KMELENFFKTVCGEV HHLRLLGDFYHQTRI AFVEFKLAESAISAL    291
    6 RNA-BP6 YYPVRVLPSKTAILP VNPTFLPRSEDEREM CSRTIYCTNVDKNAT EDDVNTFFQSACGEV TRLRLLGDQVHSTRI AFVEFAMAESAVAAL    227
    7 RNA-BP7 YYPVRVLPSKTAILP VNPTFLPRSEDEREM CSRTIYCTNVDKNAT EDDVNTFFQSACGEV TRLRLLGDQVHSTRI AFVEFAMAESAVAAL    282
    8 RNA-BP8 FYPVRVLPSKTAILP VNPTFLPRSEDEREM CTRTIYCTNIDKKVS QADVRNFFESACGEV TRLRLLGDQLHSTRI AFVEFALADSALSAL    295
    9 RNA-BP5 FYPVRVLPSKTAILP VNPKFLPRTEDEKEM VIRTVYCTNIDKKVT QLDVKNFFEELCGER HRVCSAAFAVVGLLL LWLLLLPASVALNGS    277



Page 5.1
              361         375 376         390 391         405 406         420 421         435 436         450 
    1 pat-ML  rCrGc---------- --------------- --------------- --------------- --------------- ---------------    256

    2 RNA-BP2 NCSGVLLGSLPIRVS PSKTPVRSRAIPRHQ MH------------- --------------- --------------- ---------------    336
    3 RNA-BP4 NCSGVVLGSLPIRVS PSKTPVRPRS-PRHP MH------------- --------------- --------------- ---------------    358
    4 RNA-BP3 HCSGIVLGALPIRVS PSKTPVRPHF-PRAE FK------------- --------------- --------------- ---------------    353
    5 RNA-BP1 NCSGVVLGELPIRVS PSKTPVRLHH-SDLN --------------- --------------- --------------- ---------------    320
    6 RNA-BP6 NCSGIVLGSQPISVE RLSFGIIILFIGVFG SMEKYISFSVRNGDV SENPHFPINTVTQNP QILNRQCLRKFLKFE EISQMRSAIGRRFSN    317
    7 RNA-BP7 NCSGIVLGSQPIRVS PSKTPVRSRITRSPS PN------------- --------------- --------------- ---------------    314
    8 RNA-BP8 NCSGMVVGSQPIRVS PSKTPVRPRITRPPS TN------------- --------------- --------------- ---------------    327
    9 RNA-BP5 RCQGIAVVQPMY--- --------------- --------------- --------------- --------------- ---------------    289



Page 6.1
              451         465 466         480 481         495 496         510 511         525 526         540 
    1 pat-ML  --------------- --------------- --------------- --------------- --------------- ---------------    256

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    6 RNA-BP6 PNGFTIASLVKQTPF LTQSTSHFSSSSDSS GRGRGRGSGEDGGFP AAGRGQFGVNREPVV PGREPSSAGGYGHGR GRPIQSDSISPAFTS    407
    7 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    8 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 7.1
              541         555 556         570 571         585 586         600 601         615 616         630 
    1 pat-ML  --------------- --------------- --------------- --------------- --------------- ---------------    256

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    6 RNA-BP6 FVKSDSPSIGRGRGS VGSDTVSPFAAEPPR QSPPPPQQQQSQSQQ QRSQPQQQQPRSQPQ QQPNDESQGSPVFVK LQEMQDATSSPPPPE    497
    7 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    8 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 8.1
              631         645 646         660 661         675 676         690 691         705 706         720 
    1 pat-ML  --------------- --------------- --------------- --------------- --------------- ---------------    256

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    6 RNA-BP6 SKPGQADPPDNIFNA LGNEFSHPSGAGRGK PLVESAPIRQEDNRQ IRRPPPPPQQQRVQP QQKRAPTVKDGTPKP QLSAEEAGRRARSEL    587
    7 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    8 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 9.1
              721         735 736         750 751         765 766         780 781         795 796         810 
    1 pat-ML  --------------- --------------- --------------- --------------- --------------- ---------------    256

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    6 RNA-BP6 SRGEAEGSSVGGRGG RGRGRGRGARGRGRG RGGDGWRDDKKEEEG EQEAMRIFAGDSADG EKFAEKMGPELMKTL AEGFEEICEKALPST    677
    7 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    8 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 10.1
              811         825 826         840 841         855 856         870 871         885 886         900 
    1 pat-ML  --------------- --------------- --------------- --------------- --------------- ---------------    256

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    6 RNA-BP6 THDAIIDAYDTNLMI ECEPEYIMPDFGSNP DIDEKPPMSLRECLE KVKPFIVAYEGIKDQ EEWEEAINEAMTQAP LMKEIVDHYSGPDRV    767
    7 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    8 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 11.1
              901         915 916         930 931         945 946         960 961         975 976         990 
    1 pat-ML  --------------- --------------- --------------- --------------- --    256

    2 RNA-BP2 --------------- --------------- --------------- --------------- --    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --    353
    5 RNA-BP1 --------------- --------------- --------------- --------------- --    320
    6 RNA-BP6 TAKKQNEELDRIATT LPASAPDSVKRFADR AALTLKSNPGWGFDK KYQFMDKLVLEVSQS YK    829
    7 RNA-BP7 --------------- --------------- --------------- --------------- --    314
    8 RNA-BP8 --------------- --------------- --------------- --------------- --    327
    9 RNA-BP5 --------------- --------------- --------------- --------------- --    289

Sequential Branching Clustering

pat-SB (((((((RNA-BP2 1328.06 RNA-BP4) 1020.02 RNA-BP3) 902.03 RNA-BP8) 900.68 RNA-BP7) 872.03 RNA-BP1) 802.68 RNA-BP6) 725.38 RNA-BP5)



Page 1.1
              1            15 16           30 31           45 46           60 61           75 76           90 
    1 pat-SB  --------------- --------------- --------------- --------------- --------------- ---------------      0

    2 RNA-BP2 --------------- -MAVIESVGANTTVE AGGLI-------SPS PPSSVTSQESGASSN --NDHG--------G NGIHDEIGVHVARS-     56
    3 RNA-BP4 --------------- -MAVVETGAAATAAD AGGVVI---QPPPSS PPSSMTSQDSGVSSD DQNHHSRIDQVLRHD QGLYSKIGSHVARSD     71
    4 RNA-BP3 MAVAENAGVKVDSSG QNLDNNNTAASATET TKPPCPDDDQSPKSD SSTPLTIDSTPETDD RINETA--------- ----QKVQTLNGFS-     76
    5 RNA-BP8 --------------- --------------- -----------MATV TEMPTDVVVVDDVKE V-STKS--------- EKIIDEGIEKSSITD     39
    6 RNA-BP7 --------------- --------------- --------MAAITEM ATDSNDVINDGGTGD GIEKST--------- ----DSKPEIESDDL     39
    7 RNA-BP1 --------------- --------------- ------------MAV AENVGVKVDSSNNQN -IDNNT---TSLVET KPSCSDDQTPKSKSS     44
    8 RNA-BP6 --------------- --------------- --------------- --------------- --------------- ---------------      0
    9 RNA-BP5 --------------- --------------- --------------- --------------- ------------MAA VAGGSRAAPPADSAA     18



Page 2.1
              91          105 106         120 121         135 136         150 151         165 166         180 
    1 pat-SB  --------------- -----frrLNPXApE FfPjXXXXXXggggg gggggggggggXXXX dXXjXrXjXgggggg gggggXjggggrXnr     70

    2 RNA-BP2 ---DGGESFKRD-MR ELHELLSKLNPMAKE FIPPSLTKPVVNGFN GGFFA------VNNG FVAAGNFPV------ --NEDGSF---RRKK    125
    3 RNA-BP4 -GVDGGESFKRD-MR ELQELFSKLNPMAEE FVPPSLNKQGGNGVN GGFFTSAGSFFRNNG FAGTGNGGYG----- --NENGGF---RRKK    149
    4 RNA-BP3 --GNGERDNNGE-IK DLADAFSKLNPMAQE FVPPSLARSQSGVLR NGL-------GFTNN FAAPPKLADG----- --NDHFP----RRRR    145
    5 RNA-BP8 --SKTETESRLD-MH KLVAMFKKLNPLAKE FFPSYYDPKKNNQVA KA-----NQFLPADD FETTKKQSGEEFDLD AKKDDNT----RKRR    117
    6 RNA-BP7 ---KPKSKPEYDQMK KLVAMFKKLNPEAKE FFPSYKRNTN----- -----------QSDD FVIAIKPSG------ EDNKKVAI-NRRRRN    103
    7 RNA-BP1 VLTNELIQRTSEV-- NLKSEISHLNPMAKE FVPSFLAQTH----- -------HSEFWGNR FWFTNHFPKQTIFLI G---QFA----TMRR    113
    8 RNA-BP6 --------------- ----MFKKLNPEAKE FFPSYKRNTN----- -----------QSDD FVIAIKPSG------ EDNKKVAI-NRRRRN     48
    9 RNA-BP5 VAAVAKEAEYQKGVQ KLVDLLSKLNPAAKE FVPSSAAVSSPSRKA LSADAPVFDYNSIGG WNGGGKESGA----- -----DAYQQRRRRN     98



Page 3.1
              181         195 196         210 211         225 226         240 241         255 256         270 
    1 pat-SB  XdXgpGnXggcXXnX rXXrrkkXInRTVYV SDcDrrVTEEXLAXc FXXfGQVVDCRcCGD XrSaLRFAFaEFjlX XGAXXALrXjGTcfG    160

    2 RNA-BP2 SFGQQGKR-RMNPRT SLAQREEIIRRTVYV SDIDQQVTEEQLAGL FIGFGQVVDCRICGD PNSVLRFAFIEFTDE VGARTALNLSGTMLG    214
    3 RNA-BP4 SFG-QGKR-RMNART SMAQREDVIRRTVYV SDLDQQVTEEQLAGL FVSCGQVVDCRICGD PNSVLRFAFIEFTDE EGAMTALNLSGTMLG    237
    4 RNA-BP3 SFG-QGKR-RMNKRT SLAQKDDVIRRTVYV SDIDQQVTEENLAGV FINCGQVVDCRVCGD PNSVLRFAFIEFTNE EGARAALSMSGTVLG    233
    5 RNA-BP8 NYS-QGRR-RLTGRI SKAQREDSIRRTVYV SDIDQSVTEEGLAGL FSNCGQVVDCRICGD PHSVLRFAFVEFADD QGAHEALSLGGTMLG    205
    6 RNA-BP7 NYN-QGRRVRLPGRA SKAQREDSIRRTVYV SDIDQSVTEEGLAGL FSSCGQVVDCRICGD PNSVLRFAFVEFSDD QGARSALSLGGTMIG    192
    7 RNA-BP1 NFG-KGRPW-ITKKT NLVQNEDMIKRTVYV SDIDNQVTEEQLASL FLSCGQVVDCRMCGD YKSILRFAFIEFTDA EGARSALRKSGTMFG    201
    8 RNA-BP6 NYN-QGRRVRLPGRA SKAQREDSIRRTVYV SDIDQSVTEEGLAGL FSSCGQVVDCRICGD PNSVLRFAFVEFSDD QGARSALSLGGTMIG    137
    9 RNA-BP5 GYLSQGRR-RMNERA RHADREDSIRRTVYV SDIDHTVTEERLADI FANCGQVVDCRICGD PHSVLRFAFIEFADE EGARTALNLGGTMLG    187



Page 4.1
              271         285 286         300 301         315 316         330 331         345 346         360 
    1 pat-SB  XePcnVfXSKTAIXP VNPrFLPpipDEXEX fXnTaYCTNaDKrXi pXkcrXFFpXXCGEX XrcXgXhXXXXXXXc XdcXfXXArXAcXhX    250

    2 RNA-BP2 FYPVKVMPSKTAIAP VNPTFLPRTEDEREM CARTIYCTNIDKKLT QTDIKLFFESVCGEV YRLRLLGDYHHPTRI GFVEFVMAESAIAAL    304
    3 RNA-BP4 FYPVKVLPSKTAIAP VNPTFLPRTEDEREM CARTIYCTNIDKKVT QSDVKIFFESFCGEV YRLRLLGDYQHSTRI AFVEFVMAESAIAAL    327
    4 RNA-BP3 FYPLKVLPSKTAIAP VNPTFLPRSEDEREM CVRTVYCTNIDKRIT QIDLKGFFEMLCGEV HRLR-LGDYHHQTRI AFVEFAMAESAIAAL    322
    5 RNA-BP8 FYPVRVLPSKTAILP VNPTFLPRSEDEREM CTRTIYCTNIDKKVS QADVRNFFESACGEV TRLRLLGDQLHSTRI AFVEFALADSALSAL    295
    6 RNA-BP7 YYPVRVLPSKTAILP VNPTFLPRSEDEREM CSRTIYCTNVDKNAT EDDVNTFFQSACGEV TRLRLLGDQVHSTRI AFVEFAMAESAVAAL    282
    7 RNA-BP1 SHPIRVFMSKTAIAP VNPSFLPQSKDELEK CGKTVYCTNIDKEVT KMELENFFKTVCGEV HHLRLLGDFYHQTRI AFVEFKLAESAISAL    291
    8 RNA-BP6 YYPVRVLPSKTAILP VNPTFLPRSEDEREM CSRTIYCTNVDKNAT EDDVNTFFQSACGEV TRLRLLGDQVHSTRI AFVEFAMAESAVAAL    227
    9 RNA-BP5 FYPVRVLPSKTAILP VNPKFLPRTEDEKEM VIRTVYCTNIDKKVT QLDVKNFFEELCGER HRVCSAAFAVVGLLL LWLLLLPASVALNGS    277



Page 5.1
              361         375 376         390 391         405 406         420 421         435 436         450 
    1 pat-SB  rCrGc---------- --------------- --------------- --------------- --------------- ---------------    255

    2 RNA-BP2 NCSGVLLGSLPIRVS PSKTPVRSRAIPRHQ MH------------- --------------- --------------- ---------------    336
    3 RNA-BP4 NCSGVVLGSLPIRVS PSKTPVRPRS-PRHP MH------------- --------------- --------------- ---------------    358
    4 RNA-BP3 HCSGIVLGALPIRVS PSKTPVRPHF-PRAE FK------------- --------------- --------------- ---------------    353
    5 RNA-BP8 NCSGMVVGSQPIRVS PSKTPVRPRI-TRPP STN------------ --------------- --------------- ---------------    327
    6 RNA-BP7 NCSGIVLGSQPIRVS PSKTPVRSRI-TRSP SPN------------ --------------- --------------- ---------------    314
    7 RNA-BP1 NCSGVVLGELPIRVS PSKTPVRLHH-SDLN --------------- --------------- --------------- ---------------    320
    8 RNA-BP6 NCSGIVLGSQPISVE RLSFGIIILFIGVFG SMEKYISFSVRNGDV SENPHFPINTVTQNP QILNRQCLRKFLKFE EISQMRSAIGRRFSN    317
    9 RNA-BP5 RCQGIAVVQPMY--- --------------- --------------- --------------- --------------- ---------------    289



Page 6.1
              451         465 466         480 481         495 496         510 511         525 526         540 
    1 pat-SB  --------------- --------------- --------------- --------------- --------------- ---------------    255

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    6 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    7 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    8 RNA-BP6 PNGFTIASLVKQTPF LTQSTSHFSSSSDSS GRGRGRGSGEDGGFP AAGRGQFGVNREPVV PGREPSSAGGYGHGR GRPIQSDSISPAFTS    407
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 7.1
              541         555 556         570 571         585 586         600 601         615 616         630 
    1 pat-SB  --------------- --------------- --------------- --------------- --------------- ---------------    255

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    6 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    7 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    8 RNA-BP6 FVKSDSPSIGRGRGS VGSDTVSPFAAEPPR QSPPPPQQQQSQSQQ QRSQPQQQQPRSQPQ QQPNDESQGSPVFVK LQEMQDATSSPPPPE    497
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 8.1
              631         645 646         660 661         675 676         690 691         705 706         720 
    1 pat-SB  --------------- --------------- --------------- --------------- --------------- ---------------    255

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    6 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    7 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    8 RNA-BP6 SKPGQADPPDNIFNA LGNEFSHPSGAGRGK PLVESAPIRQEDNRQ IRRPPPPPQQQRVQP QQKRAPTVKDGTPKP QLSAEEAGRRARSEL    587
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 9.1
              721         735 736         750 751         765 766         780 781         795 796         810 
    1 pat-SB  --------------- --------------- --------------- --------------- --------------- ---------------    255

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    6 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    7 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    8 RNA-BP6 SRGEAEGSSVGGRGG RGRGRGRGARGRGRG RGGDGWRDDKKEEEG EQEAMRIFAGDSADG EKFAEKMGPELMKTL AEGFEEICEKALPST    677
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 10.1
              811         825 826         840 841         855 856         870 871         885 886         900 
    1 pat-SB  --------------- --------------- --------------- --------------- --------------- ---------------    255

    2 RNA-BP2 --------------- --------------- --------------- --------------- --------------- ---------------    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --------------- ---------------    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --------------- ---------------    353
    5 RNA-BP8 --------------- --------------- --------------- --------------- --------------- ---------------    327
    6 RNA-BP7 --------------- --------------- --------------- --------------- --------------- ---------------    314
    7 RNA-BP1 --------------- --------------- --------------- --------------- --------------- ---------------    320
    8 RNA-BP6 THDAIIDAYDTNLMI ECEPEYIMPDFGSNP DIDEKPPMSLRECLE KVKPFIVAYEGIKDQ EEWEEAINEAMTQAP LMKEIVDHYSGPDRV    767
    9 RNA-BP5 --------------- --------------- --------------- --------------- --------------- ---------------    289



Page 11.1
              901         915 916         930 931         945 946         960 961         975 976         990 
    1 pat-SB  --------------- --------------- --------------- --------------- --    255

    2 RNA-BP2 --------------- --------------- --------------- --------------- --    336
    3 RNA-BP4 --------------- --------------- --------------- --------------- --    358
    4 RNA-BP3 --------------- --------------- --------------- --------------- --    353
    5 RNA-BP8 --------------- --------------- --------------- --------------- --    327
    6 RNA-BP7 --------------- --------------- --------------- --------------- --    314
    7 RNA-BP1 --------------- --------------- --------------- --------------- --    320
    8 RNA-BP6 TAKKQNEELDRIATT LPASAPDSVKRFADR AALTLKSNPGWGFDK KYQFMDKLVLEVSQS YK    829
    9 RNA-BP5 --------------- --------------- --------------- --------------- --    289