aligned-yrf3.htmlTEXTMSWD/V¸"¹‘¸"ہMô BCM PIMA Multiple Sequence Alignment Results

PIMA Multiple Sequence Alignment Results

Maximal Linkage Clustering

pat-ML (((caRF3 2999.74 cmRF3) 2314.41 pRF3) 700.88 ppRF3)

Page 1.1
		1            15 16           30 31           45 46           60 61           75 76           90 
	1 pat-ML --------------- --------------- -----QXdXgPNXAr jFXPrggggggggdX PggQXQrdggGXYXo gXrrYrggXGYgrrY	55
	2 caRF3  -----------MANA SLNGDQSKQQQQQQQ QQQQQQNYYNPNAAQ SFVPQGGYQQFQQFQ PQQQQQQY--GGYNQ -YNQYQ--GGYQQNY	74
	3 cmRF3  MSNPQDQLSNDLANA SISGDQSK--QPQQQ QPQQQQPYFNPNQAQ AFVPTGGY---QQFQ P-QQQQQY--GGYQQ NYTQYQA-GGYQQNY	81
	4 pRF3	 -MSQDQQQQQQFNAN NLAGNVQNINLNAPA YDPAVQSYI-PNTAQ AFVPSA-----QPYI PGQQEQQF--GQYGQ QQQNYNQ-GGY-NNY	79
	5 ppRF3  -----------MSKQ QDNNDLSQGVGNIDL NRKNEQRFN-PNSAS SFQPS--------FN P--QAQNFVPGQYQE -SQSYQNYQGY-QSY	66


Page 2.1
		91          105 106         120 121         135 136         150 151         165 166         180 
	1 pat-ML rrrXGdrgggggggg ggpjGYgrXYggggg ggrpGgggggggggg gggYrgggggggggg ghYrXYNXXXQXXXo XQrrhgggMSLXDdr	145
	2 caRF3  NNRGGYQQ---GYN- -NRGGYQQNYN---- --NRGG--------- YQGYNQNQQY----- GGYQQYNSQPQQQQQ QQSQG---MSLADFQ	136
	3 cmRF3  NNRGGYQQ---NYN- -NRGGYQQNYN---- --NRGGY-QQQQQQQ YQAYNPNQQY----- GGYQAYNPQQQQQQQ TQSQG---MSLADFQ	151
	4 pRF3	 NNRGGYSNNRGGYNN SNRGGY-SNYNSYNT NSNQGGYSNYNNNYA NNSYNNNNNYNNNYN QGYNNYNSQPQGQDQ QQETGSGQMSLEDYQ	168
	5 ppRF3  QQNQGFQ--A----- --QPGYQQPY----- --QQG---------- ---YQ---------- -AYQGYNNFYQPPAE PQTKA---MSLEDYN	113


Page 3.1
		181         195 196         210 211         225 226         240 241         255 256         270 
	1 pat-ML KQpXXXXXXfmXXjg KpXfpXgXXSSjaKX jggggggXjrrKXkg jXXXXrrrXrPAXgg gXrXrXjXgpXEXKX ErrjXXXjXjXAggg	235
	2 caRF3  KQKTEQQASLNKPAV KKTLKL-AGSSGIKL A------NATKKVDT TSKPQSKESSPAPAP AASASASAPQEEKKE EKEAAAATPAAAPET	219
	3 cmRF3  KQKAEQQASLNKPAV KKTLKL-ASSSGIKL A------NATKKVDT AKPAASKEASPAP-- -KDEEASA-EPEAKK ESTPVPASSSPAP--	228
	4 pRF3	 KQQKESLNKLNTKP- KKVLKLNLNSSTVKA PI-----VTKKKEEE PVNQESKTEEPAK-E EIKNQEPA-EAENKV EEESKVEAPTAA---	247
	5 ppRF3  KQKGAIQELFECKT- KENFEA-KLSSGIKI GGKKEEPKTETKPE- TKTEAKTDPKPAQKE EPKVEVPKAKSENKI ESNTESKTDSKA---	197


Page 4.1
		271         285 286         300 301         315 316         330 331         345 346         360 
	1 pat-ML gggggjXjkiggggj jjgggKXEjrjgggg gggggggggggggSg gggggggXXADjLXK ggEkralXraarDbF GGKDHcSIcFMGHVD	325
	2 caRF3  KKETSAPAETKKEAT PTPAAKNESTPIPAA AAKKESTP----VSN S---ASVATADALVK EQEDEIDEEVVKDMF GGKDHVSIIFMGHVD	302
	3 cmRF3  -----AAADS----T PAP-VKKESTPTPSV ASK--SAP----VSA S---ASVVTADALAK EQEDEVDEEVVKDMF GGKDHVSIIFMGHVD	299
	4 pRF3	 ----KPVSES-EFPA STP--KTEAKASKEV AA--AAAALKKEVSQ AKKESNVTNADALVK EQEEQIDASIVNDMF GGKDHMSIIFMGHVD	328
	5 ppRF3  ----GSKTES---KS AS---KVESKA---- -------------S- -------LAADTLPK --EDDINEEVINDLF GGKDHISILFMGHVD	250


Page 5.1
		361         375 376         390 391         405 406         420 421         435 436         450 
	1 pat-ML AGKSTMGGNcLdLTG jVDKRTakKYEnEAK DAGRQGWYLSWaMDT NKEERNDGKTIEVGn jYFET---------- ---------------	390
	2 caRF3  AGKSTMGGNILYLTG SVDKRTVEKYEREAK DAGRQGWYLSWVMDT NKEERNDGKTIEVGK AYFETDKRRYTILDA PGHKMYVSEMIGGAS	392
	3 cmRF3  AGKSTMGGNILYLTG SVDKRTVEKYEREAK DAGRQGWYLSWVMDT NKEERNDGKTIEVGK AYFETDKRRYTILDA PGHKMYVSEMIGGAS	389
	4 pRF3	 AGKSTMGGNLLFLTG AVDKRTVEKYEREAK DAGRQGWYLSWIMDT NKEERNDGKTIEVGK SYFETDKRRYTILDA PGHKLYISEMIGGAS	418
	5 ppRF3  AGKSTMGGNLLYLTG SVDKRTIDKYEKEAK DAGRQGWYLSWVMDT NKEERNDGKTIEVGR AYFET---------- ---------------	315


Page 6.1
		451         465 466         480 481         495 496         510 511         525 526         540 
	1 pat-ML --------------- --------------- --------------- --------------- --------------- ---------------	390
	2 caRF3  QADVGILVISARKGE YETGFEKGGQTREHA LLAKTQGVNKIIVVV NKMDDSTVGWSKERY QECTTKLGAFLKGIG YAKDDIIYMPVSGYT	482
	3 cmRF3  QADVGILVISARKGE YETGFEKGGQTREHA LLAKTQGVNKIIVVV NKMDDPTVNWSKERY QECTTKLGVFLKGIG YNKDDIINMPVSGYT	479
	4 pRF3	 QADVGVLVISSRKGE YEAGFERGGQSREHA ILAKTQGVNKLVVVI NKMDDPTVNWSKERY EECTTKLAMYLKGVG YQKGDVLFMPVSGYT	508
	5 ppRF3  --------------- --------------- --------------- --------------- --------------- ---------------	315


Page 7.1
		541         555 556         570 571         585 586         600 601         615 616         630 
	1 pat-ML --------------- --------------- --------------- --------------- --------------- ---------------	390
	2 caRF3  GAGLKDRVDPKDCPW YDGPSLLEYLDNMDT MNRKINGPFMMPVSG KMKDLGTIVEGKIES GHVKKGTNLIMMPNK TPIEVLTIFNETEQE	572
	3 cmRF3  GAGLKDRVNPKDCPW YEGPSLLEYLDNMDT MNRKINGPFMMPVSG KMKDLGTVVEGKIES GHVKKGTNLILMPNK TPVEVLTIYNETEQE	569
	4 pRF3	 GAGLKERVSQKDAPW YNGPSLLEYLDSMPL AVRKINDPFMLPISS KMKDLGTVIEGKIES GHVKKGQNLLVMPNK TQVEVTTIYNETEAE	598
	5 ppRF3  --------------- --------------- --------------- --------------- --------------- ---------------	315


Page 8.1
		631         645 646         660 661         675 676         690 691         705 706         720 
	1 pat-ML --------------- --------------- --------------- --------------- --------------- ---------------	390
	2 caRF3  CDTAFSGEQVRLKIK GIEEEDLQPGYVLTS PKNPVKTVTRFEAQI AIVELKSILSNGFSC VMHLHTAIEEVKFIE LKHKLEKGTNRKSKK	662
	3 cmRF3  ADTAFSGEQVRLKIK GVEEEDLQPGYVLTS PKNPVKTVTKFEAQI AIVELKSILSNGFSC VMHLHTAIEEVKFVE LKHKLEKGTNRKSKK	659
	4 pRF3	 ADSAFCGEQVRLRLR GIEEEDLSAGYVLSS INHPVKTVTRFEAQI AIVELKSILSTGFSC VMHVHTAIEEVTFTQ LLHNLQKGTNRRSKK	688
	5 ppRF3  --------------- --------------- --------------- --------------- --------------- ---------------	315


Page 9.1
		721         735 736         750 751         765 766	780 781         795 796         810 
	1 pat-ML --------------- --------------- --------------- --------	390
	2 caRF3  PPAFAKKGMKIIAIL EVGELVCAETYKDYP QLGRFTLRDQGTTIA IGKITKLL	715
	3 cmRF3  PPAFAKKGMKIIAIL EVSEPVCAETYKDYP QLGRFTLRDQGTTIA IGKITKLL	712
	4 pRF3	 APAFAKQGMKIIAVL ETTEPVCIESYDDYP QLGRFTLRDQGQTIA IGKVTKLL	741
	5 ppRF3  --------------- --------------- --------------- --------	315

Sequential Branching Clustering

pat-SB (((caRF3 2999.74 cmRF3) 2342.78 pRF3) 754.15 ppRF3)

Page 1.1
		1            15 16           30 31           45 46	 60 61           75 76           90 
	1 pat-SB --------------- --------------- -----QXdXgPNXAr jFXPrggggggggdX PggQXQrdggGXYXo gXrrYrggXGYgrrY	55
	2 caRF3  -----------MANA SLNGDQSKQQQQQQQ QQQQQQNYYNPNAAQ SFVPQGGYQQFQQFQ PQQQQQQY--GGYNQ -YNQYQ--GGYQQNY	74
	3 cmRF3  MSNPQDQLSNDLANA SISGDQSK--QPQQQ QPQQQQPYFNPNQAQ AFVPTGGY---QQFQ P-QQQQQY--GGYQQ NYTQYQA-GGYQQNY	81
	4 pRF3	 -MSQDQQQQQQFNAN NLAGNVQNINLNAPA YDPAVQSYI-PNTAQ AFVPSA-----QPYI PGQQEQQF--GQYGQ QQQNYNQ-GGY-NNY	79
	5 ppRF3  -----------MSKQ QDNNDLSQGVGNIDL NRKNEQRFN-PNSAS SFQPS--------FN P--QAQNFVPGQYQE -SQSYQNYQGY-QSY	66


Page 2.1
		91          105 106         120 121         135 136         150 151         165 166         180 
	1 pat-SB rrrXGdrgggggggg ggpjGYgrXYggggg ggrpGgggggggggg gggYrgggggggggg ghYrXYNXXXQXXXo XQrrhgggMSLXDdr	145
	2 caRF3  NNRGGYQQ---GYN- -NRGGYQQNYN---- --NRGG--------- YQGYNQNQQY----- GGYQQYNSQPQQQQQ QQSQG---MSLADFQ	136
	3 cmRF3  NNRGGYQQ---NYN- -NRGGYQQNYN---- --NRGGY-QQQQQQQ YQAYNPNQQY----- GGYQAYNPQQQQQQQ TQSQG---MSLADFQ	151
	4 pRF3	 NNRGGYSNNRGGYNN SNRGGY-SNYNSYNT NSNQGGYSNYNNNYA NNSYNNNNNYNNNYN QGYNNYNSQPQGQDQ QQETGSGQMSLEDYQ	168
	5 ppRF3  QQNQGFQ--A----- --QPGYQQPY----- --QQG---------- ---YQ---------- -AYQGYNNFYQPPAE PQTKA---MSLEDYN	113


Page 3.1
		181         195 196         210 211         225 226         240 241         255 256         270 
	1 pat-SB KQpXXXXXXfmXXjg KpXfpXgXXSSjaKX jggggggXjrrKXkg jXXXXrrrXrPAXgg gXrXrXjXgpXEXKX ErrjXXXjXjXAggg	235
	2 caRF3  KQKTEQQASLNKPAV KKTLKL-AGSSGIKL A------NATKKVDT TSKPQSKESSPAPAP AASASASAPQEEKKE EKEAAAATPAAAPET	219
	3 cmRF3  KQKAEQQASLNKPAV KKTLKL-ASSSGIKL A------NATKKVDT AKPAASKEASPAP-- -KDEEASA-EPEAKK ESTPVPASSSPAP--	228
	4 pRF3	 KQQKESLNKLNTKP- KKVLKLNLNSSTVKA PI-----VTKKKEEE PVNQESKTEEPAK-E EIKNQEPA-EAENKV EEESKVEAPTAA---	247
	5 ppRF3  KQKGAIQELFECKT- KENFEA-KLSSGIKI GGKKEEPKTETKPE- TKTEAKTDPKPAQKE EPKVEVPKAKSENKI ESNTESKTDSKA---	197


Page 4.1
		271         285 286         300 301         315 316         330 331         345 346         360 
	1 pat-SB gggggjXjkiggggj jjgggKXEjrjgggg gggggggggggggSg gggggggXXADjLXK ggEkralXraarDbF GGKDHcSIcFMGHVD	325
	2 caRF3  KKETSAPAETKKEAT PTPAAKNESTPIPAA AAKKESTP----VSN S---ASVATADALVK EQEDEIDEEVVKDMF GGKDHVSIIFMGHVD	302
	3 cmRF3  -----AAADS----T PAP-VKKESTPTPSV ASK--SAP----VSA S---ASVVTADALAK EQEDEVDEEVVKDMF GGKDHVSIIFMGHVD	299
	4 pRF3	 ----KPVSES-EFPA STP--KTEAKASKEV AA--AAAALKKEVSQ AKKESNVTNADALVK EQEEQIDASIVNDMF GGKDHMSIIFMGHVD	328
	5 ppRF3  ----GSKTES---KS AS---KVESKA---- -------------S- -------LAADTLPK --EDDINEEVINDLF GGKDHISILFMGHVD	250


Page 5.1
		361         375 376         390 391         405 406         420 421         435 436         450 
	1 pat-SB AGKSTMGGNcLdLTG jVDKRTakKYEnEAK DAGRQGWYLSWaMDT NKEERNDGKTIEVGn jYFET---------- ---------------	390
	2 caRF3  AGKSTMGGNILYLTG SVDKRTVEKYEREAK DAGRQGWYLSWVMDT NKEERNDGKTIEVGK AYFETDKRRYTILDA PGHKMYVSEMIGGAS	392
	3 cmRF3  AGKSTMGGNILYLTG SVDKRTVEKYEREAK DAGRQGWYLSWVMDT NKEERNDGKTIEVGK AYFETDKRRYTILDA PGHKMYVSEMIGGAS	389
	4 pRF3	 AGKSTMGGNLLFLTG AVDKRTVEKYEREAK DAGRQGWYLSWIMDT NKEERNDGKTIEVGK SYFETDKRRYTILDA PGHKLYISEMIGGAS	418
	5 ppRF3  AGKSTMGGNLLYLTG SVDKRTIDKYEKEAK DAGRQGWYLSWVMDT NKEERNDGKTIEVGR AYFET---------- ---------------	315


Page 6.1
		451         465 466         480 481         495 496         510 511         525 526         540 
	1 pat-SB --------------- --------------- --------------- --------------- --------------- ---------------	390
	2 caRF3  QADVGILVISARKGE YETGFEKGGQTREHA LLAKTQGVNKIIVVV NKMDDSTVGWSKERY QECTTKLGAFLKGIG YAKDDIIYMPVSGYT	482
	3 cmRF3  QADVGILVISARKGE YETGFEKGGQTREHA LLAKTQGVNKIIVVV NKMDDPTVNWSKERY QECTTKLGVFLKGIG YNKDDIINMPVSGYT	479
	4 pRF3	 QADVGVLVISSRKGE YEAGFERGGQSREHA ILAKTQGVNKLVVVI NKMDDPTVNWSKERY EECTTKLAMYLKGVG YQKGDVLFMPVSGYT	508
	5 ppRF3  --------------- --------------- --------------- --------------- --------------- ---------------	315


Page 7.1
		541         555 556         570 571         585 586         600 601         615 616         630 
	1 pat-SB --------------- --------------- --------------- --------------- --------------- ---------------	390
	2 caRF3  GAGLKDRVDPKDCPW YDGPSLLEYLDNMDT MNRKINGPFMMPVSG KMKDLGTIVEGKIES GHVKKGTNLIMMPNK TPIEVLTIFNETEQE	572
	3 cmRF3  GAGLKDRVNPKDCPW YEGPSLLEYLDNMDT MNRKINGPFMMPVSG KMKDLGTVVEGKIES GHVKKGTNLILMPNK TPVEVLTIYNETEQE	569
	4 pRF3	 GAGLKERVSQKDAPW YNGPSLLEYLDSMPL AVRKINDPFMLPISS KMKDLGTVIEGKIES GHVKKGQNLLVMPNK TQVEVTTIYNETEAE	598
	5 ppRF3  --------------- --------------- --------------- --------------- --------------- ---------------	315


Page 8.1
		631         645 646         660 661         675 676         690 691         705 706         720 
	1 pat-SB --------------- --------------- --------------- --------------- --------------- ---------------	390
	2 caRF3  CDTAFSGEQVRLKIK GIEEEDLQPGYVLTS PKNPVKTVTRFEAQI AIVELKSILSNGFSC VMHLHTAIEEVKFIE LKHKLEKGTNRKSKK	662
	3 cmRF3  ADTAFSGEQVRLKIK GVEEEDLQPGYVLTS PKNPVKTVTKFEAQI AIVELKSILSNGFSC VMHLHTAIEEVKFVE LKHKLEKGTNRKSKK	659
	4 pRF3	 ADSAFCGEQVRLRLR GIEEEDLSAGYVLSS INHPVKTVTRFEAQI AIVELKSILSTGFSC VMHVHTAIEEVTFTQ LLHNLQKGTNRRSKK	688
	5 ppRF3  --------------- --------------- --------------- --------------- --------------- ---------------	315


Page 9.1
		721         735 736         750 751         765 766         780 781         795 796         810 	
	1 pat-SB --------------- --------------- --------------- --------    390
	2 caRF3  PPAFAKKGMKIIAIL EVGELVCAETYKDYP QLGRFTLRDQGTTIA IGKITKLL    715 
	3 cmRF3  PPAFAKKGMKIIAIL EVSEPVCAETYKDYP QLGRFTLRDQGTTIA IGKITKLL    712 
	4 pRF3	 APAFAKQGMKIIAVL ETTEPVCIESYDDYP QLGRFTLRDQGQTIA IGKVTKLL    741
	5 ppRF3  --------------- --------------- --------------- --------    315